| FunGen-xQTL protocol data | ROSMAP | Protocol | | — | Staged | |
| Knight ADRC brain gene expression QTL | Knight-ADRC | eQTL | parietal cortex | — | Staged | Controlled |
| Knight ADRC brain metabolomics QTL | Knight-ADRC | metQTL | parietal cortex | — | Staged | Controlled |
| Knight ADRC brain methylation QTL | Knight-ADRC | mQTL | parietal cortex | — | Staged | Controlled |
| Knight ADRC brain proteomics QTL | Knight-ADRC | pQTL | parietal cortex | 412 | Staged | Controlled |
| Knight ADRC brain splicing QTL | Knight-ADRC | sQTL | parietal cortex | — | Staged | Controlled |
| MetaBrain Brain Gene Expression QTL | MetaBrain | eQTL | 5 brain regions | — | Staged | |
| MiGA multi-brain region gene expression | MiGA | eQTL | microglia | 255 | Staged | Controlled |
| MSBB brain alternative splicing QTL | MSBB | sQTL | 4 brain regions | — | Staged | Controlled |
| MSBB brain gene expression QTL | MSBB | eQTL | 4 brain regions | — | Staged | Controlled |
| MSBB brain methylation QTL | MSBB | mQTL | brain | — | Staged | Controlled |
| MSBB brain proteomics QTL | MSBB | pQTL | brain | — | Staged | Controlled |
| ROSMAP AC alternative splicing QTL | ROSMAP | sQTL | AC | — | Staged | Controlled |
| ROSMAP AC gene expression QTL | ROSMAP | eQTL | AC | — | Staged | Controlled |
| ROSMAP DLPFC alternative splicing QTL | ROSMAP | sQTL | DLPFC | 839 | Staged | Controlled |
| ROSMAP DLPFC Brain Metabolomics QTL | ROSMAP | metQTL | DLPFC | — | Staged | Controlled |
| ROSMAP DLPFC gene expression QTL | ROSMAP | eQTL | DLPFC | 839 | Staged | Controlled |
| ROSMAP DLPFC glycoproteomics QTL | ROSMAP | glycoQTL | DLPFC | — | Staged | Controlled |
| ROSMAP DLPFC H3K9ac QTL | ROSMAP | haQTL | DLPFC | 596 | Staged | Controlled |
| ROSMAP DLPFC methylation QTL | ROSMAP | mQTL | DLPFC | — | Staged | Controlled |
| ROSMAP DLPFC protein expression QTL | ROSMAP | pQTL | DLPFC | 416 | Staged | Controlled |
| ROSMAP PCC alternative splicing QTL | ROSMAP | sQTL | PCC | — | Staged | Controlled |
| ROSMAP PCC Expression QTL | ROSMAP | eQTL | PCC | — | Staged | Controlled |
| ROSMAP RNA-seq microglia gene expression QTL | ROSMAP | eQTL | microglia | — | Staged | Controlled |
| ROSMAP RNA-seq monocyte QTL | ROSMAP | eQTL | monocyte | — | Staged | Controlled |
| ROSMAP Single-Nucleus Alternative Splicing QTL (snSplicing) | ROSMAP | sQTL | DLPFC, 7 cell types | 530 | Staged | Controlled |
| ROSMAP Single-Nucleus Chromatin Accessibility QTL (caQTL) | ROSMAP | caQTL | DLPFC, 6 cell types | — | Staged | Controlled |
| ROSMAP snRNA-seq pseudo-bulk gene expression QTL | ROSMAP | snuc-eQTL | DLPFC, 7 cell types | 424 | Staged | Controlled |
| STARNET macrophage gene expression QTL | STARNET | eQTL | macrophage | 471 | Staged | Controlled |