MSBB brain alternative splicing

Cohort: MSBBMount Sinai Brain Bank
Data type: SplicingOmics data
Tissue or cell type: 4 brain regions
Sample size: Not recorded on this page
Release status: Stagednot yet verified
Access: ControlledData use certificate
Lead analysts: Minghui WangSelect a name to email them
QTL results: MSBB brain sQTL

Open syn69670592 in Synapse ↗

Access

Controlled access. Request data access for MSBB on the AD Knowledge Portal; you need a Synapse account. See How to get the data.

Where	ID	Access	What you get
Synapse	syn69670592	Controlled	Files described below

Other Synapse IDs on this page syn69670597 syn69670600 syn69670611 syn69670630 syn69865816

shell
pip install synapseclient
synapse login
synapse get -r syn69670592

Contact

Minghui Wang

QTL Analysis

QTL analysis for this dataset is documented in ../../qtl/sQTL/MSBB_brain_splicing_qtl.md.

Flagship paper analyses:

Fine-mapping (SuSiE-RSS): syn69670592
TWAS weight models: syn69670600
Quantile TWAS (qTWAS) models: syn69670611
Multi-context colocalization (ColocBoost): syn69670597
AD GWAS–xQTL colocalization results: syn69865816
AD GWAS–xQTL colocalization models: syn69670630